Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00249.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3047
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32


Found at i:577 original size:3 final size:3

Alignment explanation


    Indices: 569--602  Score: 59
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        559 TGGTGTTTTA

                                                *        
        569 GGT GGT GGT GGT GGT GGT GGT GGT GGT TGT GGT G
          1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT G

        603 TAATAGCCAC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35


Consensus pattern (3 bp):   
GGT

Found at i:2778 original size:83 final size:83

Alignment explanation


    Indices: 2639--2805  Score: 334
    Period size: 83  Copynumber: 2.0  Consensus size: 83

       2629 TATGTGAAAC

                                                                             
       2639 GACAAAGGGTTGAATCTTAGATCATGATAATTCAATAACGAAAAGCATAGGTAGCTTATAGTGGT
          1 GACAAAGGGTTGAATCTTAGATCATGATAATTCAATAACGAAAAGCATAGGTAGCTTATAGTGGT

                              
       2704 ACGTAAATAACATGGGGG
         66 ACGTAAATAACATGGGGG

                                                                             
       2722 GACAAAGGGTTGAATCTTAGATCATGATAATTCAATAACGAAAAGCATAGGTAGCTTATAGTGGT
          1 GACAAAGGGTTGAATCTTAGATCATGATAATTCAATAACGAAAAGCATAGGTAGCTTATAGTGGT

                              
       2787 ACGTAAATAACATGGGGG
         66 ACGTAAATAACATGGGGG

             
       2805 G
          1 G

       2806 CACGTAGAAA


Statistics
Matches: 84,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  83   84  1.00

ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25


Consensus pattern (83 bp):   
GACAAAGGGTTGAATCTTAGATCATGATAATTCAATAACGAAAAGCATAGGTAGCTTATAGTGGT
ACGTAAATAACATGGGGG
Done.