Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00257.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5109
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:4470 original size:15 final size:14

Alignment explanation


    Indices: 4446--4475  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       4436 ATAAACGGAA

                          
       4446 AGAGAAGGAGAAGG
          1 AGAGAAGGAGAAGG

                           
       4460 AGAGAAAGGAGAAGG
          1 AGAG-AAGGAGAAGG

             
       4475 A
          1 A

       4476 AAGAGAACGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00


Consensus pattern (14 bp):   
AGAGAAGGAGAAGG
Done.