Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00262.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3138
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33


Found at i:418 original size:111 final size:113

Alignment explanation


    Indices: 222--444  Score: 333
    Period size: 111  Copynumber: 2.0  Consensus size: 113

        212 TATTCTGTTA

                         *     *  *                              *           
        222 AATTAGGGTTACATGTGACTGTGGATTTGGGGGAATTTTTTAAATTTCTGCTGGGTTTAAGGTTT
          1 AATTAGGGTTACAGGTGACCGTCGATTTGGGGGAATTTTTTAAATTTCTGCTGAGTTTAAGGTTT

                 *                                          
        287 CTAAGTCTCTTTATTTTCAATTCCAGTGGTATAATACTTCTAGGGTTG
         66 CTAAGACTCTTTATTTTCAATTCCAGTGGTATAATACTTCTAGGGTTG

                       *                             *          *      *     
        335 AATTAGGGTTATAGGTGACCGTCGA-TTGGGGGAATTTTTTTAATTTCTG-TTAGTTTAGGGTTT
          1 AATTAGGGTTACAGGTGACCGTCGATTTGGGGGAATTTTTTAAATTTCTGCTGAGTTTAAGGTTT

                        *                       *          
        398 CTAAGACTCTTTGTTTTCAATTCCAGTGGTATAATATTTCTAGGGTT
         66 CTAAGACTCTTTATTTTCAATTCCAGTGGTATAATACTTCTAGGGTT

        445 TTAGAGCTGT


Statistics
Matches: 99,  Mismatches: 11, Indels: 2
        0.88            0.10        0.02

Matches are distributed among these distances:
 111   55  0.56
 112   23  0.23
 113   21  0.21

ACGTcount: A:0.22, C:0.10, G:0.24, T:0.44


Consensus pattern (113 bp):   
AATTAGGGTTACAGGTGACCGTCGATTTGGGGGAATTTTTTAAATTTCTGCTGAGTTTAAGGTTT
CTAAGACTCTTTATTTTCAATTCCAGTGGTATAATACTTCTAGGGTTG
Done.