Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00273.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:979 original size:31 final size:31

Alignment explanation


    Indices: 908--981  Score: 132
    Period size: 30  Copynumber: 2.4  Consensus size: 31

        898 ACATGATATT

                        *                  
        908 AGAAATATCTACGGTATTAATTTGTTTCTAA
          1 AGAAATATCTACAGTATTAATTTGTTTCTAA

                                           
        939 AG-AATATCTACAGTATTAATTTGTTTCTAA
          1 AGAAATATCTACAGTATTAATTTGTTTCTAA

                         
        969 AGAAATATCTACA
          1 AGAAATATCTACA

        982 AGAATATCAT


Statistics
Matches: 41,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  30   29  0.71
  31   12  0.29

ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39


Consensus pattern (31 bp):   
AGAAATATCTACAGTATTAATTTGTTTCTAA
Done.