Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00275.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3286
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.31


Found at i:2996 original size:20 final size:20

Alignment explanation


    Indices: 2971--3012  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2961 ACCATGATCA

                                
       2971 ACATTTGTCTGTATTGGAAG
          1 ACATTTGTCTGTATTGGAAG

                                
       2991 ACATTTGTCTGTATTGGAAG
          1 ACATTTGTCTGTATTGGAAG

              
       3011 AC
          1 AC

       3013 GTGAGATAAG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38


Consensus pattern (20 bp):   
ACATTTGTCTGTATTGGAAG
Done.