Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00279.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1899
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34


Found at i:1171 original size:96 final size:97

Alignment explanation


    Indices: 996--1171  Score: 221
    Period size: 96  Copynumber: 1.8  Consensus size: 97

        986 CCTCCTTCAC

                 *      *                                      *   *         
        996 ATCATGATTATTTCTATCCTTAGAAAGTGACTGATTATTGCATTTGCCAATGCTGTTTGTCATTA
          1 ATCATAATTATTCCTATCCTTAGAAAGTGACTGATTATTGCATTTGCCAATACTGCTTGTCATTA

            *                               
       1061 TATTTGGTTTGCTCTAAATGAAGGTTAGTGCT
         66 CATTTGGTTTGCTCTAAATGAAGGTTAGTGCT

                                       *     *      *       * *              
       1093 ATCATAATTATTCCTATCCTT-GTAAATTGACTTATT-TTTCATTTGCTAGTACTGCTTGTCATT
          1 ATCATAATTATTCCTATCCTTAG-AAAGTGACTGATTATTGCATTTGCCAATACTGCTTGTCATT

            *     *         
       1156 GCATTTTGTTTGCTCT
         65 ACATTTGGTTTGCTCT

       1172 TCTTGTCACT


Statistics
Matches: 66,  Mismatches: 12, Indels: 3
        0.81            0.15        0.04

Matches are distributed among these distances:
  96   36  0.55
  97   30  0.45

ACGTcount: A:0.23, C:0.15, G:0.15, T:0.47


Consensus pattern (97 bp):   
ATCATAATTATTCCTATCCTTAGAAAGTGACTGATTATTGCATTTGCCAATACTGCTTGTCATTA
CATTTGGTTTGCTCTAAATGAAGGTTAGTGCT
Done.