Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00295.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5135
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:739 original size:67 final size:66

Alignment explanation


    Indices: 660--821  Score: 182
    Period size: 67  Copynumber: 2.4  Consensus size: 66

        650 CAAAATCTAG

                              *            * *           *   *    *          
        660 ACCTGAAACTGATGCTTAACTATAAAATTTTGCGAGCATTTTGT-CCTATTAACTTATGCCTGCT
          1 ACCTG-AACTGATGCTTAGCTATAAAA-TTTACAAGCATTTTGTAAC-AGTAACCTATGCCTGCT

                
        724 GCCA
         63 GCCA

                           *                                  *              
        728 ACCTGAACTGATGCTCAGCTATATAAATTTACAAGCATTTTGTAACAGTAGCCTATGCCTGCTGC
          1 ACCTGAACTGATGCTTAGCTATA-AAATTTACAAGCATTTTGTAACAGTAACCTATGCCTGCTGC

              
        793 CA
         65 CA

                     **                
        795 ACCTGAGACCCATGCTTAGCTATAAAA
          1 ACCTGA-ACTGATGCTTAGCTATAAAA

        822 AATTTTCATG


Statistics
Matches: 80,  Mismatches: 11, Indels: 7
        0.82            0.11        0.07

Matches are distributed among these distances:
  67   57  0.71
  68   23  0.29

ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31


Consensus pattern (66 bp):   
ACCTGAACTGATGCTTAGCTATAAAATTTACAAGCATTTTGTAACAGTAACCTATGCCTGCTGCC
A
Done.