Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01328.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:176 original size:15 final size:15

Alignment explanation


    Indices: 156--189  Score: 68
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        146 AGAGAGAAGA

                           
        156 GAGATATTATTGGGG
          1 GAGATATTATTGGGG

                           
        171 GAGATATTATTGGGG
          1 GAGATATTATTGGGG

                
        186 GAGA
          1 GAGA

        190 AAGGAAAGCG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.29, C:0.00, G:0.41, T:0.29


Consensus pattern (15 bp):   
GAGATATTATTGGGG
Done.