Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00304.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3291
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35


Found at i:747 original size:17 final size:18

Alignment explanation


    Indices: 715--749  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

        705 CCAATGTAAA

                *             
        715 TTATCTTTATTGCAAATT
          1 TTATATTTATTGCAAATT

                              
        733 TTATATTTA-TGCAAATT
          1 TTATATTTATTGCAAATT

        750 ATGTTTCTCC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    8  0.50
  18    8  0.50

ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54


Consensus pattern (18 bp):   
TTATATTTATTGCAAATT
Done.