Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00325.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1602
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29


Found at i:399 original size:23 final size:23

Alignment explanation


    Indices: 369--414  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        359 GTCACACCCT

                                   
        369 TGCCATTTTGGTGAAACGATGGC
          1 TGCCATTTTGGTGAAACGATGGC

                                   
        392 TGCCATTTTGGTGAAACGATGGC
          1 TGCCATTTTGGTGAAACGATGGC

        415 AAGAGAGGTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30


Consensus pattern (23 bp):   
TGCCATTTTGGTGAAACGATGGC
Done.