Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00333.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3365
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32


Found at i:2744 original size:12 final size:11

Alignment explanation


    Indices: 2722--2756  Score: 52
    Period size: 12  Copynumber: 3.0  Consensus size: 11

       2712 TGTGCAGTAT

                        
       2722 AGAAAACAAAAA
          1 AGAAAA-AAAAA

                        
       2734 AGAAGAAAAAAA
          1 AGAA-AAAAAAA

                       
       2746 AGAAAAAAAAA
          1 AGAAAAAAAAA

       2757 GAGGGATTTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  11    7  0.32
  12   13  0.59
  13    2  0.09

ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00


Consensus pattern (11 bp):   
AGAAAAAAAAA
Done.