Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00334.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3488
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34


Found at i:2878 original size:41 final size:41

Alignment explanation


    Indices: 2821--2903  Score: 166
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       2811 AGTAGATTCA

                                                     
       2821 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
          1 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT

                                                     
       2862 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
          1 TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT

             
       2903 T
          1 T

       2904 ACAAAATATA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   42  1.00

ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37


Consensus pattern (41 bp):   
TTGCTAAGCCTCTTAAATCACTTAGTTAAAATTTACAAAGT
Done.