Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00339.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 300

Length: 501
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24


Found at i:417 original size:17 final size:17

Alignment explanation


    Indices: 395--427  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        385 GTATTCGGGC

                              
        395 TTGGGT-GTAACCGGGTT
          1 TTGGGTAGTAA-CGGGTT

                            
        412 TTGGGTAGTAACGGGT
          1 TTGGGTAGTAACGGGT

        428 CTGCTGGGTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  17   11  0.73
  18    4  0.27

ACGTcount: A:0.15, C:0.09, G:0.42, T:0.33


Consensus pattern (17 bp):   
TTGGGTAGTAACGGGTT
Done.