Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00346.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 912

Length: 1520
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29


Found at i:24 original size:15 final size:14

Alignment explanation


    Indices: 4--38  Score: 52
    Period size: 15  Copynumber: 2.4  Consensus size: 14

          1 CCC

                      *    
          4 TTTCCTTTCTTTTCT
          1 TTTCCTTTCTCTT-T

                          
         19 TTTCCTTTCTCTTT
          1 TTTCCTTTCTCTTT

                  
         33 TTTCCT
          1 TTTCCT

         39 CTTCCAAAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14    7  0.37
  15   12  0.63

ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71


Consensus pattern (14 bp):   
TTTCCTTTCTCTTT
Done.