Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00353.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1907
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35


Found at i:676 original size:6 final size:6

Alignment explanation


    Indices: 609--655  Score: 94
    Period size: 6  Copynumber: 7.8  Consensus size: 6

        599 GAAAAGTGCT

                                                                  
        609 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTC
          1 TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTCC TCTTC

        656 TTCCTATTCC


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   41  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (6 bp):   
TCTTCC

Found at i:684 original size:21 final size:21

Alignment explanation


    Indices: 633--698  Score: 71
    Period size: 21  Copynumber: 3.1  Consensus size: 21

        623 TTCCTCTTCC

                   *    *     *  
        633 TCTTCCTCTTCCTCTTCCTCT
          1 TCTTCCTATTCCCCTTCCCCT

                                 
        654 TCTTCCTATTCCCCTTCCCCT
          1 TCTTCCTATTCCCCTTCCCCT

                 *            *   
        675 TCTTCTTATTCTCCC-TCTCCT
          1 TCTTCCTATTC-CCCTTCCCCT

               
        696 TCT
          1 TCT

        699 CCTTCTCCTT


Statistics
Matches: 39,  Mismatches: 5, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  21   36  0.92
  22    3  0.08

ACGTcount: A:0.03, C:0.47, G:0.00, T:0.50


Consensus pattern (21 bp):   
TCTTCCTATTCCCCTTCCCCT

Found at i:693 original size:6 final size:6

Alignment explanation


    Indices: 683--721  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        673 CTTCTTCTTA

                   *                               *     
        683 TTCTCC CTCTCC TTCTCC TTCTCC TTCTCC TTCTAC TTC
          1 TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTC

        722 ATATCTCTCT


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.03, C:0.49, G:0.00, T:0.49


Consensus pattern (6 bp):   
TTCTCC

Done.