Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00376.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 969

Length: 1616
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28


Found at i:1389 original size:21 final size:21

Alignment explanation


    Indices: 1365--1407  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1355 TTTGTCTACT

                        *        
       1365 TAGTAGCTGTTTTCTTAGGAA
          1 TAGTAGCTGTTTACTTAGGAA

                         *       
       1386 TAGTAGCTGTTTAGTTAGGAA
          1 TAGTAGCTGTTTACTTAGGAA

             
       1407 T
          1 T

       1408 TTGTAGCTTC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.07, G:0.26, T:0.42


Consensus pattern (21 bp):   
TAGTAGCTGTTTACTTAGGAA
Done.