Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01333.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 722

Length: 1204
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:633 original size:6 final size:6

Alignment explanation


    Indices: 624--664  Score: 64
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        614 CAGAAGATGG

                 *      *                                  
        624 AAGAGG AAGAGG AAGAGA AAGAGA AAGAGA AAGAGA AAGAG
          1 AAGAGA AAGAGA AAGAGA AAGAGA AAGAGA AAGAGA AAGAG

        665 TCCATGATAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00


Consensus pattern (6 bp):   
AAGAGA

Done.