Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00391.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4068
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34


Found at i:2026 original size:22 final size:22

Alignment explanation


    Indices: 1998--2042  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1988 CCACACAAAG

                                  
       1998 TAAGTTTTGTGCTTATATTAGA
          1 TAAGTTTTGTGCTTATATTAGA

                                  
       2020 TAAGTTTTGTGCTTATATTAGA
          1 TAAGTTTTGTGCTTATATTAGA

             
       2042 T
          1 T

       2043 GCATGTAGCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51


Consensus pattern (22 bp):   
TAAGTTTTGTGCTTATATTAGA
Done.