Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00394.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5636
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:4668 original size:24 final size:24

Alignment explanation


    Indices: 4641--4692  Score: 86
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       4631 TGAGGGGATG

                          *       * 
       4641 TATTGAGAATCTTTGATTATTTGA
          1 TATTGAGAATCTTTCATTATTTAA

                                    
       4665 TATTGAGAATCTTTCATTATTTAA
          1 TATTGAGAATCTTTCATTATTTAA

                
       4689 TATT
          1 TATT

       4693 ATTAAATAGT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.31, C:0.06, G:0.12, T:0.52


Consensus pattern (24 bp):   
TATTGAGAATCTTTCATTATTTAA
Done.