Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00399.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 801
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27


Found at i:227 original size:15 final size:15

Alignment explanation


    Indices: 203--232  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        193 AAGCAAATGG

                 *         
        203 CACCATCATCATCAT
          1 CACCACCATCATCAT

                           
        218 CACCACCATCATCAT
          1 CACCACCATCATCAT

        233 TATGCAAAAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.33, C:0.43, G:0.00, T:0.23


Consensus pattern (15 bp):   
CACCACCATCATCAT
Done.