Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00407.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1450
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:1333 original size:4 final size:4

Alignment explanation


    Indices: 1326--1377  Score: 104
    Period size: 4  Copynumber: 13.0  Consensus size: 4

       1316 TATATATATA

                                                                       
       1326 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG

                
       1374 TATG
          1 TATG

       1378 GTTTCAGCCT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   48  1.00

ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50


Consensus pattern (4 bp):   
TATG

Done.