Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00438.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2058
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31


Found at i:1541 original size:44 final size:44

Alignment explanation


    Indices: 1478--1567  Score: 180
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1468 AGAATAAGAG

                                                        
       1478 ATGGTATCGGTAGCAGATGTAGACAGGTTATGAAAGTGAAACAT
          1 ATGGTATCGGTAGCAGATGTAGACAGGTTATGAAAGTGAAACAT

                                                        
       1522 ATGGTATCGGTAGCAGATGTAGACAGGTTATGAAAGTGAAACAT
          1 ATGGTATCGGTAGCAGATGTAGACAGGTTATGAAAGTGAAACAT

              
       1566 AT
          1 AT

       1568 AACGAGTCAC


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   46  1.00

ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26


Consensus pattern (44 bp):   
ATGGTATCGGTAGCAGATGTAGACAGGTTATGAAAGTGAAACAT
Done.