Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00150.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 358

Length: 598
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:374 original size:78 final size:78

Alignment explanation


    Indices: 245--395  Score: 275
    Period size: 78  Copynumber: 1.9  Consensus size: 78

        235 TCAGAGTGTG

                                                                 *           
        245 GATGGGCCAACTTCTAGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGATGTAGAAGTTGC
          1 GATGGGCCAACTTCTAGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGAAGTAGAAGTTGC

                         
        310 TACTGAATATGCC
         66 TACTGAATATGCC

                           *                       *                         
        323 GATGGGCCAACTTCTGGCTTAGCTGATGAGATTGCAGCTTCTCCAGAATCGGAAGTAGAAGTTGC
          1 GATGGGCCAACTTCTAGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGAAGTAGAAGTTGC

                    
        388 TACTGAAT
         66 TACTGAAT

        396 CTGCAGGCAG


Statistics
Matches: 70,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  78   70  1.00

ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27


Consensus pattern (78 bp):   
GATGGGCCAACTTCTAGCTTAGCTGATGAGATTGCAGCTACTCCAGAATCGGAAGTAGAAGTTGC
TACTGAATATGCC
Done.