Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00448.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35


Found at i:2823 original size:88 final size:87

Alignment explanation


    Indices: 2674--2846  Score: 337
    Period size: 88  Copynumber: 2.0  Consensus size: 87

       2664 TGAAGAGACG

                                                                             
       2674 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT
          1 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT

                                   
       2739 ATATAAAAAATCAGAATAACTTA
         66 ATAT-AAAAATCAGAATAACTTA

                                                                             
       2762 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT
          1 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT

                                
       2827 ATATAAAAATCAGAATAACT
         66 ATATAAAAATCAGAATAACT

       2847 ATCTGATTAG


Statistics
Matches: 85,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  87   16  0.19
  88   69  0.81

ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39


Consensus pattern (87 bp):   
GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT
ATATAAAAATCAGAATAACTTA
Done.