Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00448.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3494
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:3452 original size:88 final size:87

Alignment explanation


    Indices: 3303--3475  Score: 337
    Period size: 88  Copynumber: 2.0  Consensus size: 87

       3293 TGAAGAGACG

                                                                             
       3303 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT
          1 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT

                                   
       3368 ATATAAAAAATCAGAATAACTTA
         66 ATAT-AAAAATCAGAATAACTTA

                                                                             
       3391 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT
          1 GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT

                                
       3456 ATATAAAAATCAGAATAACT
         66 ATATAAAAATCAGAATAACT

       3476 ATCTGATTAG


Statistics
Matches: 85,  Mismatches: 0, Indels: 1
        0.99            0.00        0.01

Matches are distributed among these distances:
  87   16  0.19
  88   69  0.81

ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39


Consensus pattern (87 bp):   
GCATGTGGGTTAGGGTTAATGCTAATGCTAATGATTTGCTTTATCATTGGTTGTACCATCTCTTT
ATATAAAAATCAGAATAACTTA
Done.