Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00452.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2546
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34


Found at i:2339 original size:2 final size:2

Alignment explanation


    Indices: 2332--2365  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       2322 AAAGATAAAA

                                                                
       2332 AG AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       2366 AGATCCTTTT


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   30  0.97

ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00


Consensus pattern (2 bp):   
AG

Done.