Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00462.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2422
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26


Found at i:81 original size:6 final size:6

Alignment explanation


    Indices: 72--101  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

         62 CAAGAATAAG

                                              
         72 AACAGC AACAGC AACAGC AACAGC AACAGC
          1 AACAGC AACAGC AACAGC AACAGC AACAGC

        102 CAAAATAAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.50, C:0.33, G:0.17, T:0.00


Consensus pattern (6 bp):   
AACAGC

Found at i:242 original size:12 final size:12

Alignment explanation


    Indices: 217--250  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        207 TCCCAAGGAA

                 *   *  
        217 GGAATAGAAACG
          1 GGAATCGAATCG

                        
        229 GGAATCGAATCG
          1 GGAATCGAATCG

                      
        241 GGAATCGAAT
          1 GGAATCGAAT

        251 TTCTGGGTTG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.41, C:0.12, G:0.32, T:0.15


Consensus pattern (12 bp):   
GGAATCGAATCG
Done.