Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga06g00471.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620
Length: 1034
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Found at i:397 original size:148 final size:148
Alignment explanation
Indices: 129--427 Score: 571
Period size: 148 Copynumber: 2.0 Consensus size: 148
119 CGTTTCTTCA
129 GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
1 GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
194 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
66 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
259 CTAGCTAGGTTCAAACAG
131 CTAGCTAGGTTCAAACAG
*
277 GTAAGAATGGCATGAATCCGGTTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
1 GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
*
342 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATTTTCTCTTTCATCACCTC
66 TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
*
407 CTAGCTATGTTCAAACAG
131 CTAGCTAGGTTCAAACAG
425 GTA
1 GTA
428 GGCATTCGAT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 148 1.00
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.40
Consensus pattern (148 bp):
GTAAGAATGGCATGAATCCGATTTTGTCTCCCCCTATCCACAACCTTTATTAGCGTTTTCCTTCT
TTTTTACAGATTCAATCCAACTCCCTTTCTTTTTCTTTTAAGATCATCTTCTCTTTCATCACCTC
CTAGCTAGGTTCAAACAG
Done.