Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00483.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1873
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32


Found at i:1232 original size:7 final size:7

Alignment explanation


    Indices: 1222--1256  Score: 70
    Period size: 7  Copynumber: 5.0  Consensus size: 7

       1212 TTACCGTTTC

                   
       1222 TCCATTT
          1 TCCATTT

                   
       1229 TCCATTT
          1 TCCATTT

                   
       1236 TCCATTT
          1 TCCATTT

                   
       1243 TCCATTT
          1 TCCATTT

                   
       1250 TCCATTT
          1 TCCATTT

       1257 AAGCAGTTTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57


Consensus pattern (7 bp):   
TCCATTT

Done.