Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00488.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37


Found at i:85 original size:21 final size:21

Alignment explanation


    Indices: 61--124  Score: 56
    Period size: 25  Copynumber: 2.8  Consensus size: 21

         51 GGTAAGCTCC

                              * *
         61 TTCTTCTTCTTCCTTCTTTCG
          1 TTCTTCTTCTTCCTTCTTCCA

                                     
         82 TTCTTCATTCATTTTCCTTCTTCCA
          1 TTCTTC-TTC---TTCCTTCTTCCA

                  *           
        107 TTCTTCATCTTCTCTTCT
          1 TTCTTCTTCTTC-CTTCT

        125 AGGTTTTTGT


Statistics
Matches: 35,  Mismatches: 3, Indels: 9
        0.74            0.06        0.19

Matches are distributed among these distances:
  21    9  0.26
  22    8  0.23
  24    2  0.06
  25   16  0.46

ACGTcount: A:0.06, C:0.33, G:0.02, T:0.59


Consensus pattern (21 bp):   
TTCTTCTTCTTCCTTCTTCCA
Done.