Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00498.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8104
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:4206 original size:31 final size:28

Alignment explanation


    Indices: 4157--4214  Score: 73
    Period size: 31  Copynumber: 2.0  Consensus size: 28

       4147 ATTATTCAAA

                                         
       4157 AGTTTTTTTTTAAGTAATTGAG-AAGTTG
          1 AGTTTTTTTTTAAGTAATT-AGTAAGTTG

                                          
       4185 AGTTTTATTTTTAAGCCTAATTAGTAAGTT
          1 AGTTTT-TTTTTAAG--TAATTAGTAAGTT

       4215 TTAAGTAACG


Statistics
Matches: 26,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  28    6  0.23
  29    8  0.31
  30    2  0.08
  31   10  0.38

ACGTcount: A:0.29, C:0.03, G:0.17, T:0.50


Consensus pattern (28 bp):   
AGTTTTTTTTTAAGTAATTAGTAAGTTG
Done.