Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01346.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30


Found at i:211 original size:7 final size:7

Alignment explanation


    Indices: 201--226  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

        191 GGAGTGGGGG

                   
        201 CTTTTGC
          1 CTTTTGC

                   
        208 CTTTTGC
          1 CTTTTGC

                   
        215 CTTTTGC
          1 CTTTTGC

                 
        222 CTTTT
          1 CTTTT

        227 CATTAAAGGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.00, C:0.27, G:0.12, T:0.62


Consensus pattern (7 bp):   
CTTTTGC
Done.