Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00508.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 592

Length: 987
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20


Found at i:446 original size:252 final size:252

Alignment explanation


    Indices: 1--517  Score: 908
    Period size: 252  Copynumber: 2.1  Consensus size: 252

                         *                     *     *                       
          1 AAAAAGCTGAGGATCACCGAAGCTGATAAGAACAGCCTCGTTGAAGAATTGAGAACAGAAGTTGA
          1 AAAAAGCTGAGGAACACCGAAGCTGATAAGAACAGACTCGTCGAAGAATTGAGAACAGAAGTTGA

                                                        *                    
         66 AGCTCAAAAAGCAGAACAACAGTCACTTTCAAATGAAGTCCAGATGTTGAAGCAAGAACTTAAGC
         66 AGCTCAAAAAGCAGAACAACAGTCACTTTCAAATGAAGTCCAGACGTTGAAGCAAGAACTTAAGC

                                                                             
        131 AGATCAAAAGAGAGAAACAGGACAAGGAAGAGGAAATTGGACGCTGTAAGAACTATAATGATGAG
        131 AGATCAAAAGAGAGAAACAGGACAAGGAAGAGGAAATTGGACGCTGTAAGAACTATAATGATGAG

                       *                                             
        196 CTGGAAGTGAAGTTGAATAGTTTGCAGGCAGTAGCTCAAGAGAAGAATGATCTTGCT
        196 CTGGAAGTGAAATTGAATAGTTTGCAGGCAGTAGCTCAAGAGAAGAATGATCTTGCT

                          *  *                  *                            
        253 AAAAAGCTGAGGAAGACTGAAGCTGATAAGAACAGATTCGTCGAAGAATTGAGAACAGAAGTTGA
          1 AAAAAGCTGAGGAACACCGAAGCTGATAAGAACAGACTCGTCGAAGAATTGAGAACAGAAGTTGA

                                                   *                      *  
        318 AGCTCAAAAAGCAGAACAACAGTCACTTTCAAATGAAGTGCAGACGTTGAAGCAAGAACTTAGGC
         66 AGCTCAAAAAGCAGAACAACAGTCACTTTCAAATGAAGTCCAGACGTTGAAGCAAGAACTTAAGC

                                  *           **                             
        383 AGATCAAAAGAGAGAAACAGGAGAAGGAAGAGGAGCTTGGACGCTGTAAGAACTATAATGATGAG
        131 AGATCAAAAGAGAGAAACAGGACAAGGAAGAGGAAATTGGACGCTGTAAGAACTATAATGATGAG

                                                                     
        448 CTGGAAGTGAAATTGAATAGTTTGCAGGCAGTAGCTCAAGAGAAGAATGATCTTGCT
        196 CTGGAAGTGAAATTGAATAGTTTGCAGGCAGTAGCTCAAGAGAAGAATGATCTTGCT

            *            
        505 GAAAAGCTGAGGA
          1 AAAAAGCTGAGGA

        518 CTGCAGAAGC


Statistics
Matches: 251,  Mismatches: 14, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
 252  251  1.00

ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18


Consensus pattern (252 bp):   
AAAAAGCTGAGGAACACCGAAGCTGATAAGAACAGACTCGTCGAAGAATTGAGAACAGAAGTTGA
AGCTCAAAAAGCAGAACAACAGTCACTTTCAAATGAAGTCCAGACGTTGAAGCAAGAACTTAAGC
AGATCAAAAGAGAGAAACAGGACAAGGAAGAGGAAATTGGACGCTGTAAGAACTATAATGATGAG
CTGGAAGTGAAATTGAATAGTTTGCAGGCAGTAGCTCAAGAGAAGAATGATCTTGCT

Done.