Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00511.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 760

Length: 1268
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28


Found at i:471 original size:59 final size:59

Alignment explanation


    Indices: 391--508  Score: 182
    Period size: 59  Copynumber: 2.0  Consensus size: 59

        381 AGATGGAAGA

                                                               *       
        391 AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGTCAGCACG
          1 AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGGCAGCACG

                   *        *               *     *          *         
        450 AACCCTCTTCACATTGTAGCCATGAAAGAGTTTATTCATGCCAGACCCTGGGCAGCACG
          1 AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGGCAGCACG

        509 GTTGCCGATG


Statistics
Matches: 53,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  59   53  1.00

ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21


Consensus pattern (59 bp):   
AACCCTCCTCACATTGCAGCCATGAAAGAGTTGATTCAAGCCAGACCCTAGGCAGCACG
Done.