Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00537.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 862

Length: 1437
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31


Found at i:997 original size:18 final size:18

Alignment explanation


    Indices: 974--1021  Score: 78
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        964 AAAATGTGAG

                             *
        974 AAATGATGTTCACATTTT
          1 AAATGATGTTCACATTTC

                              
        992 AAATGATGTTCACATTTC
          1 AAATGATGTTCACATTTC

                 *      
       1010 AAATGGTGTTCA
          1 AAATGATGTTCA

       1022 AATTGATGGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   28  1.00

ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40


Consensus pattern (18 bp):   
AAATGATGTTCACATTTC
Done.