Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00538.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2030
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33


Found at i:205 original size:2 final size:2

Alignment explanation


    Indices: 198--244  Score: 94
    Period size: 2  Copynumber: 23.5  Consensus size: 2

        188 TTCTTCTTCT

                                                                          
        198 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                   
        240 TC TC T
          1 TC TC T

        245 TTTTGCTATT


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   45  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Done.