Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00573.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 993

Length: 1655
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34


Found at i:1469 original size:43 final size:42

Alignment explanation


    Indices: 1376--1504  Score: 231
    Period size: 42  Copynumber: 3.0  Consensus size: 42

       1366 CCGTGGATGA

                                                      
       1376 TAAGGATGATTTCATGGAATGAGTGTTTTTCCAATCTCATTT
          1 TAAGGATGATTTCATGGAATGAGTGTTTTTCCAATCTCATTT

                                                       
       1418 TAAGGATGATTTCATGGAATGAGTGTTTTTCCAAATCTCATTT
          1 TAAGGATGATTTCATGGAATGAGTGTTTTTCC-AATCTCATTT

                         *                             
       1461 TAAGGATGATTTTGATGGAATGAGTGTTTTTCCAATCTCATTT
          1 TAAGGATGA-TTTCATGGAATGAGTGTTTTTCCAATCTCATTT

             
       1504 T
          1 T

       1505 TAGGCAAGTT


Statistics
Matches: 84,  Mismatches: 1, Indels: 3
        0.95            0.01        0.03

Matches are distributed among these distances:
  42   32  0.38
  43   30  0.36
  44   22  0.26

ACGTcount: A:0.26, C:0.11, G:0.19, T:0.43


Consensus pattern (42 bp):   
TAAGGATGATTTCATGGAATGAGTGTTTTTCCAATCTCATTT
Done.