Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00577.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 945

Length: 1575
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:1268 original size:6 final size:6

Alignment explanation


    Indices: 1257--1298  Score: 84
    Period size: 6  Copynumber: 7.0  Consensus size: 6

       1247 GGGAGACGAC

                                                            
       1257 GGGGAG GGGGAG GGGGAG GGGGAG GGGGAG GGGGAG GGGGAG
          1 GGGGAG GGGGAG GGGGAG GGGGAG GGGGAG GGGGAG GGGGAG

       1299 CTTTGGCTAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   36  1.00

ACGTcount: A:0.17, C:0.00, G:0.83, T:0.00


Consensus pattern (6 bp):   
GGGGAG

Done.