Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00579.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:475 original size:40 final size:40

Alignment explanation


    Indices: 430--511  Score: 155
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        420 CTGGGAAACT

                                                    
        430 TAGTTTTTTGAAGTGAGTGCTTTACCATGATTTATTTTGC
          1 TAGTTTTTTGAAGTGAGTGCTTTACCATGATTTATTTTGC

                                             *      
        470 TAGTTTTTTGAAGTGAGTGCTTTACCATGATTTGTTTTGC
          1 TAGTTTTTTGAAGTGAGTGCTTTACCATGATTTATTTTGC

              
        510 TA
          1 TA

        512 TCTCTAAACA


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  40   41  1.00

ACGTcount: A:0.20, C:0.10, G:0.21, T:0.50


Consensus pattern (40 bp):   
TAGTTTTTTGAAGTGAGTGCTTTACCATGATTTATTTTGC
Done.