Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00587.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2872
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:78 original size:6 final size:6

Alignment explanation


    Indices: 63--99  Score: 67
    Period size: 6  Copynumber: 6.3  Consensus size: 6

         53 CCTTTGTTTC

                                                        
         63 TATA-T TATATT TATATT TATATT TATATT TATATT TA
          1 TATATT TATATT TATATT TATATT TATATT TATATT TA

        100 ATCCAGTTTT


Statistics
Matches: 31,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5    4  0.13
   6   27  0.87

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (6 bp):   
TATATT

Done.