Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01358.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5348
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26


Found at i:5015 original size:9 final size:9

Alignment explanation


    Indices: 5001--5026  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       4991 GGGGAGGCAA

                     
       5001 GAAGAAAGG
          1 GAAGAAAGG

                     
       5010 GAAGAAAGG
          1 GAAGAAAGG

                    
       5019 GAAGAAAG
          1 GAAGAAAG

       5027 TTAGTCCAGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00


Consensus pattern (9 bp):   
GAAGAAAGG
Done.