Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00592.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1706
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:1620 original size:24 final size:24

Alignment explanation


    Indices: 1588--1635  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1578 TCCGACAAAA

                         *          
       1588 CATAGTTATTACAGCAGCATAGTT
          1 CATAGTTATTACAACAGCATAGTT

                                    
       1612 CATAGTTATTACAACAGCATAGTT
          1 CATAGTTATTACAACAGCATAGTT

       1636 TTCTTCAGAT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Consensus pattern (24 bp):   
CATAGTTATTACAACAGCATAGTT
Done.