Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00607.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 556

Length: 928
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:907 original size:16 final size:17

Alignment explanation


    Indices: 878--914  Score: 51
    Period size: 16  Copynumber: 2.2  Consensus size: 17

        868 TTTTCTTTTT

                             
        878 ATAAACAAAATAAAA-A
          1 ATAAACAAAATAAAATA

                              
        894 ATAAA-AAAATTAAAATA
          1 ATAAACAAAA-TAAAATA

                
        911 ATAA
          1 ATAA

        915 TTTTAGGTAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  15    4  0.21
  16   10  0.53
  17    5  0.26

ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19


Consensus pattern (17 bp):   
ATAAACAAAATAAAATA
Done.