Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00617.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3866
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:2255 original size:375 final size:374

Alignment explanation


    Indices: 1566--2309  Score: 1362
    Period size: 375  Copynumber: 2.0  Consensus size: 374

       1556 AAATATGTTA

                                  *                                          
       1566 TTCAAATGGTTCATTGGATGTTTGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
          1 TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA

                                                      *                      
       1631 CCTGGTATATCTTCACAATCTTATTTACCACAACTCTTTCTCTGAGAAAACATGGAAACCAGTTT
         66 CCTGGTATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTTT

                                                                             
       1696 TTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTTA
        131 TTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTTA

                                                       *        *           *
       1761 ATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTTATTTTCAGCTTCATATTTACT
        196 ATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGATTCATATTTACC

                                                                             
       1826 AATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTAC
        261 AATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTAC

                                              *              
       1891 AATTGCGCTATTTACGAGGATACTGCAATTAGTTTCACCATTATTTATT
        326 AATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATTTATT

                                                                             
       1940 TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
          1 TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA

                                            *                                
       2005 CCTGGTAATATCTTCACAATCTTATTTACCACGACTCTTTCTCCGAGAAAACATGGAAACCAGTT
         66 CCTGGT-ATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTT

                                                *                            
       2070 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGATGAAAAAAGGGCAATTACATGAAATTTTT
        130 TTTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTT

                                     *              *                        
       2135 AATCAGGATAGTGGTTAACTAATCTGAAAGGCATTTCGACGTCTCATTTTCAGATTCATATTTAC
        195 AATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGATTCATATTTAC

                                  *                                  *       
       2200 CAATATAGTAGTTTTATGTTGATTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCATTTGTTTA
        260 CAATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTA

                           *                             
       2265 CAATTGCGCTATTTATGAGGATACTGCAATTAGTTCCACCATTAT
        325 CAATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTAT

       2310 GGTGTCATAG


Statistics
Matches: 356,  Mismatches: 13, Indels: 1
        0.96            0.04        0.00

Matches are distributed among these distances:
 374   70  0.20
 375  286  0.80

ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39


Consensus pattern (374 bp):   
TTCAAATGGTTCATTGGATGTTGGCACTCTGAATTCTTGGATTCTGGTGTTTCTAAGATCTGTTA
CCTGGTATATCTTCACAATCTTATTTACCACAACTCTTTCTCCGAGAAAACATGGAAACCAGTTT
TTAATGATCTGCATGAGTTTCAAATACTGAAGTGACGAAAAAAGGGCAATTACATGAAATTTTTA
ATCAGGATAGTGGTTAACTAATCTCAAAGGCATTTCGACATCTCATTTTCAGATTCATATTTACC
AATATAGTAGTTTTATGTTGACTGTTGTCTTTAAGCTATCCTTCATTGTTGCTGCACTTGTTTAC
AATTGCGCTATTTACGAGGATACTGCAATTAGTTCCACCATTATTTATT
Done.