Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00629.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3404
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37


Found at i:2401 original size:24 final size:24

Alignment explanation


    Indices: 2358--2454  Score: 65
    Period size: 24  Copynumber: 3.9  Consensus size: 24

       2348 AATACTTTTC

                    *               
       2358 TTAAA-ATGTAATGAATTTTTGGA
          1 TTAAATATTTAATGAATTTTTGGA

                                   ** 
       2381 TTAAATATTTAAT-AATATTTTACAA
          1 TTAAATATTTAATGAAT-TTTT-GGA

             *                   *      
       2406 TAAAATTCATTAGTAATGAATCTTTGGA
          1 TTAAA-T-ATT--TAATGAATTTTTGGA

                                  
       2434 TTAAATATTTAAT-AATATTTT
          1 TTAAATATTTAATGAAT-TTTT

       2455 AATTGATCAT


Statistics
Matches: 56,  Mismatches: 9, Indels: 17
        0.68            0.11        0.21

Matches are distributed among these distances:
  23   11  0.20
  24   17  0.30
  25    5  0.09
  26    4  0.07
  27    4  0.07
  28    5  0.09
  29    7  0.12
  30    3  0.05

ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46


Consensus pattern (24 bp):   
TTAAATATTTAATGAATTTTTGGA
Done.