Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00630.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30


Found at i:641 original size:5 final size:5

Alignment explanation


    Indices: 633--663  Score: 53
    Period size: 5  Copynumber: 6.2  Consensus size: 5

        623 CTGGCCTGGC

                                        *        
        633 CTGCT CTGCT CTGCT CTGCT CTGCC CTGCT C
          1 CTGCT CTGCT CTGCT CTGCT CTGCT CTGCT C

        664 GACTCTGTCT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.00, C:0.45, G:0.19, T:0.35


Consensus pattern (5 bp):   
CTGCT

Done.