Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00635.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8074
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33


Found at i:7933 original size:26 final size:26

Alignment explanation


    Indices: 7883--7933  Score: 66
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       7873 GAGTAACAAT

                              * *     
       7883 TAGTTAATCAGTTACTCATCTGTTAG
          1 TAGTTAATCAGTTACTCAACAGTTAG

                          * *        
       7909 TAGTTAATCAGTTAGTTAACAGTTA
          1 TAGTTAATCAGTTACTCAACAGTTA

       7934 CTTCTCATCT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  26   21  1.00

ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41


Consensus pattern (26 bp):   
TAGTTAATCAGTTACTCAACAGTTAG
Done.