Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga06g00638.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2083
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Found at i:2012 original size:205 final size:206
Alignment explanation
Indices: 1660--2078 Score: 759
Period size: 205 Copynumber: 2.0 Consensus size: 206
1650 TAGTCTCATT
* *
1660 TGTTTTAAACCCCGAAAAGGTGTTGGATGCATCGATTTCATGGCAGTTGAGGGGTCTGGCATGAA
1 TGTTTTAAACCCCGAAAAGGTGTTGGATGCATCGATTTCATGACAGTTCAGGGGTCTGGCATGAA
*
1725 AGTATTCAATAAATTTGTGGTGGGGAAGAACTTGCTGCTGCCTTCTAGTTTTTTGGTATGGTATT
66 AGTATTCAATAAATTTGTGGTGGGGAAGAACTTGCTGCTGCCTTCTAGTTTCTTGGTATGGTATT
1790 GATGAGAAGTGTATATGATGTCCAATACCGCTGTTG-TATCAAATGTGGTGCTATTTCCTAGTCA
131 GATGAGAAGTGTATATGATGTCCAATACCGCTGTTGTTATCAAATGTGGTGCTATTTCCTAGTCA
*
1854 ATGAATGTCCC
196 ATGAATATCCC
1865 TGTTTTAAACCCCGAAAAGGTGTTGGATGCATCGATTTCATGACAGTTCAGGGGTCTGGCATGAA
1 TGTTTTAAACCCCGAAAAGGTGTTGGATGCATCGATTTCATGACAGTTCAGGGGTCTGGCATGAA
* *
1930 AGTATTTAATAAATTTTTGGTGGGGAAGAACTTGCTGCTGCCTTCTAGTTTCTTGGTATGGTATT
66 AGTATTCAATAAATTTGTGGTGGGGAAGAACTTGCTGCTGCCTTCTAGTTTCTTGGTATGGTATT
1995 GATGAGAAGTGTATATGATGTCCAATACCGCTGTTGTTTTATCAAATGTGGTGCTATTTCCTAGT
131 GATGAGAAGTGTATATGATGTCCAATACCGCTGTTG--TTATCAAATGTGGTGCTATTTCCTAGT
2060 CAATGAATATCCC
194 CAATGAATATCCC
2073 TGTTTT
1 TGTTTT
2079 TGGTC
Statistics
Matches: 205, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
205 161 0.79
208 44 0.21
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (206 bp):
TGTTTTAAACCCCGAAAAGGTGTTGGATGCATCGATTTCATGACAGTTCAGGGGTCTGGCATGAA
AGTATTCAATAAATTTGTGGTGGGGAAGAACTTGCTGCTGCCTTCTAGTTTCTTGGTATGGTATT
GATGAGAAGTGTATATGATGTCCAATACCGCTGTTGTTATCAAATGTGGTGCTATTTCCTAGTCA
ATGAATATCCC
Done.