Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00647.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2236
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27


Found at i:1545 original size:12 final size:12

Alignment explanation


    Indices: 1524--1561  Score: 58
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       1514 TGATCATCAT

                        
       1524 CAGCAACAGCAG
          1 CAGCAACAGCAG

                 *      
       1536 CAGCACCAGCAG
          1 CAGCAACAGCAG

                    *   
       1548 CAGCAACAACAG
          1 CAGCAACAGCAG

              
       1560 CA
          1 CA

       1562 ACAGCAACAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.42, C:0.37, G:0.21, T:0.00


Consensus pattern (12 bp):   
CAGCAACAGCAG

Found at i:1773 original size:15 final size:15

Alignment explanation


    Indices: 1740--1798  Score: 64
    Period size: 15  Copynumber: 3.9  Consensus size: 15

       1730 TGAAAGTTTC

                    *  *  *
       1740 CAGCAGCAGCAGCAG
          1 CAGCAGCAACAACAA

                *   *      
       1755 CAGCTGCATCAACAA
          1 CAGCAGCAACAACAA

                           
       1770 CAGCAGCAACAACAA
          1 CAGCAGCAACAACAA

                    *     
       1785 CAGCAGCAGCAACA
          1 CAGCAGCAACAACA

       1799 TTATAAACTG


Statistics
Matches: 37,  Mismatches: 7, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  15   37  1.00

ACGTcount: A:0.42, C:0.34, G:0.20, T:0.03


Consensus pattern (15 bp):   
CAGCAGCAACAACAA
Done.