Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g00647.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2944
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29


Found at i:2253 original size:12 final size:12

Alignment explanation


    Indices: 2232--2269  Score: 58
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       2222 TGATCATCAT

                        
       2232 CAGCAACAGCAG
          1 CAGCAACAGCAG

                 *      
       2244 CAGCACCAGCAG
          1 CAGCAACAGCAG

                    *   
       2256 CAGCAACAACAG
          1 CAGCAACAGCAG

              
       2268 CA
          1 CA

       2270 ACAGCAACAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.42, C:0.37, G:0.21, T:0.00


Consensus pattern (12 bp):   
CAGCAACAGCAG

Found at i:2481 original size:15 final size:15

Alignment explanation


    Indices: 2448--2506  Score: 64
    Period size: 15  Copynumber: 3.9  Consensus size: 15

       2438 TGAAAGTTTC

                    *  *  *
       2448 CAGCAGCAGCAGCAG
          1 CAGCAGCAACAACAA

                *   *      
       2463 CAGCTGCATCAACAA
          1 CAGCAGCAACAACAA

                           
       2478 CAGCAGCAACAACAA
          1 CAGCAGCAACAACAA

                    *     
       2493 CAGCAGCAGCAACA
          1 CAGCAGCAACAACA

       2507 TTATAAACTG


Statistics
Matches: 37,  Mismatches: 7, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  15   37  1.00

ACGTcount: A:0.42, C:0.34, G:0.20, T:0.03


Consensus pattern (15 bp):   
CAGCAGCAACAACAA
Done.